Modeling Gene Divergence Using Optimal Transport
We use optimal transport to look at gene expression as cells differentiate towards a final cell type in sea urchin.
Selected Projects
Here I feature some of my more visually interesting projects. I’ll try and include some of the more interesting hobby projects that I do too.
Wasserstein Principal Curves
We demonstrate principal curves in Wasserstein (probability) space on a simulated dataset. We also show how to use the method for ordering data.
Celltype Timing Alignment Between Sea Urchin Species
Using optimal transport to compare developmental timing between sea urchin species.