Publications

Anton Afanassiev, Kevin Wei, Nozomu Yachie, Kenji Sugioka, Geoffrey Schiebinger (2026). DemuxHMM: Large-Scale Single-Cell Embryo Profiling via Recombination Barcoding. On bioRxiv.
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Andrew Warren, Anton Afanassiev, Forest Kobayashi, Young-Heon Kim, Geoffrey Schiebinger (2025). Principal Curves In Metric Spaces And The Space Of Probability Measures. On arXiv.
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Abdull J Massri, Alejandro Berrio, Anton Afanassiev, Laura Greenstreet, Krista Pipho, Maria Byrne, Geoffrey Schiebinger, David R McClay, Gregory A Wray (2024). Single-Cell Transcriptomics Reveals Evolutionary Reconfiguration of Embryonic Cell Fate Specification in the Sea Urchin Heliocidaris erythrogramma. In Genome Biology and Evolution.
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Laura Greenstreet, Anton Afanassiev, Yusuke Kijima, Matthieu Heitz, Soh Ishiguro, Samuel King, Nozomu Yachie, Geoffrey Schiebinger (2023). DNA-GPS: A theoretical framework for optics-free spatial genomics and synthesis of current methods. In Cell Systems.
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Abdull J Massri, Laura Greenstreet, Anton Afanassiev, Alejandro Berrio, Gregory A Wray, Geoffrey Schiebinger, David R McClay (2021). Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo. Development.
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