Modeling Gene Divergence Using Optimal Transport
We use optimal transport to look at gene expression as cells differentiate towards a final cell type in sea urchin.
Celltype Timing Alignment Between Sea Urchin Species
Using optimal transport to compare developmental timing between sea urchin species.
Single-Cell Transcriptomics Reveals Evolutionary Reconfiguration of Embryonic Cell Fate Specification in the Sea Urchin Heliocidaris erythrogramma
We use optimal transport to analyze timing differences between He. urchin and Lv. urchin species.
abdull-j-massri
Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo
We use optimal transport to analyze a time series of sea urchin development and reconstruct published GRNs.
abdull-j-massri